PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.242980.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family FAR1
Protein Properties Length: 175aa    MW: 19666.2 Da    PI: 7.0073
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.242980.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR185.96e-2762150290
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     fY++YA+++GF +r+ + ++s+++g+i  r++ C+keg+  + + k    r++r++tr gCka+++vk +k+gkw++tk+++eHnH+l+
  Cucsa.242980.1  62 FYDKYARQLGFVMRVMSCRRSEKDGRILARRLGCNKEGHCVSIRGKFGAVRKPRPSTREGCKAMIHVKYDKSGKWVITKFVKEHNHPLV 150
                     9**************************************999999989***************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-2462150IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MDLRDNSERC LLAVDADEGE EGIEGGSLES PAGTELNDCD GDIILEPYEG MEFESEDAAK  60
IFYDKYARQL GFVMRVMSCR RSEKDGRILA RRLGCNKEGH CVSIRGKFGA VRKPRPSTRE  120
GCKAMIHVKY DKSGKWVITK FVKEHNHPLV VSPREARQTM MEVKTSLPLH PSTAX
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008443099.11e-117PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1
RefseqXP_008443098.11e-117PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1
SwissprotQ9SZL84e-27FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A0A0LBE01e-107A0A0A0LBE0_CUCSA; Uncharacterized protein
STRINGGLYMA06G48170.33e-80(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF96531104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.13e-79FAR1 family protein